You have to also follow a similar process:
- Upload Kickstart and your archive
- Run Kickstart
- When the extraction is complete and before clicking on "Run the installer" upload your custom php.ini file inside the "installation" directory and your custom .htaccess file in the site's root directory.
- Now click on the "Run the installer" button
- When the restoration is complete close the installer's tab and click on Clean Up in Kickstart's tab.
- Now upload your custom php.ini in BOTH the site's root and its "administrator" directory. Also re-upload your custom .htaccess file in the site's root.
If you are wondering why: during the extraction, Kickstart renames .htaccess to htaccess.bak to prevent the .htaccess from screwing up the extraction when transferring sites between different servers. When you click on the Clean Up button it does the inverse procedure, renaming htaccess.bak to .htaccess. This is why you need to upload the customised .htaccess file twice.
Morever, if you are using Admin Tools' .htaccess Maker on your site you MUST put the
php_flag magic_quotes_gpc off
SetEnv PHPRC /php.ini
directives in the custom code to add to the bottom of the file before clicking on "Save & Create .htaccess"
Nicholas K. Dionysopoulos
Lead Developer and Director
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