Thanks for the excellent article which I have already given you praise for:
https://www.akeebabackup.com/documentation/walkthroughs/advanced-site-transfers.html
However, I think you need to update it. Since J2.5 there have been two more tables added for users. user_profiles and user_notes. I think they should be included in the exclusion list.
Would love to see notes on 3rd party components, I'm sure a few are very popular, I know some of mine are "must haves" for every installation.
For example:
Freestyle Support Portal
All ticket information is stored in the The *_fss_ticket tables. The *_fss_users table has the various permissions for each user. They are the only tables that have per user info in (apart from author information)
I'm sure you could get others, perhaps by user submission, as often we have to go to the developers and ask them, but it would be a decent place to pool our answers.