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Description of my issue:
I am in the process of upgrading a joomla site running akeeba at subdomain hirsch.cloudstreetportal.com.
To do this, I created a new subdomain called hirsch53.cloudstreetportal.com and built out my new site there. Akeeba also works fine here.
Once I was done building out and testing the hirsch53.cloudstreetportal.com site, I decided to update the home directory for subdomain hirsch.cloudstreetportal.com to point at the directory where hirsch53.cloudstreetportal.com lives.
I did this and everything worked for Joomla.
I also updated some of the paths in joomla's config settings (configuration.php) and checked php.ini and ,htaccess.
However, when I go into the back-end after updating the subdomains home directory, Akeeba warns that the default directory is in use and that the php version is out of date. When I try to update a profile in akeeba's admin, I can't access all of the configuration settings.
So, I ended up renaming directories and re-establishing the original home directory for hirsch.cloudstreetportal.com.
Akeeba then ran fine and I could access all of the configuration settings.
I'm not dissatisfied with this approach but wanted to pass this along in case there is an issue with the first approach that I was attempting to use.
thanks again,
Bruce