I recall one instance where restore.php didn't get updated and the extraction couldn't handle the new jps format. Let's reinstall Backup anyway. Please download it again and install Akeeba Backup twice, back to back, without doing anything in between. Do not uninstall, that will cause you to lose all your settings and records and possibly your stored backup archives.
Are you doing these two extracts on the same server? I could see this if Kickstart was on Linux and the site was on a Windows server. An invalid character in a file extension would do it.
Are you using the "Ignore most errors" flag on Kickstart?
Dale L. Brackin
Support Specialist
English: native
Please keep in mind my timezone and cultural differences when reading my replies. Thank you!
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